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      Immunoblotting of I3 Neurons and dopaminergic neurons

      Pietro De Camilli, Nisha Mohd Rafiq

      Published: 2024-03-19 DOI: 10.17504/protocols.io.3byl49eqjgo5/v1
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      Abstract

      This protocol describes the preparation of cell lysate from and iPSC-derived neurons (I3Neurons, dopaminergic) and the immunoblotting procedure.

      Attachments

      Rafiq_Immunoblotting.docx

      Steps

      Cell culture and treatments

      1.

      Grow I3 Neurons and dopaminergic (DA) neurons on six-well plates (3-5 × 105 cells/well).

      2.

      After differentiation in their respective maturation media, wash the neurons with 1mL ice-cold PBS.

      3.

      Lyse the cells in 200µL 1xRIPA lysis buffer (10X RIPA lysis buffer, Sigma-Aldrich) supplemented with complete™ EDTA-free protease inhibitor cocktail (Roche) and PhosSTOP phosphatase inhibitor cocktail (Roche).

      4.

      Centrifuge the cells at 13000x g,0h 0m 0s for0h 10m 0s.

      5.

      Collect the supernatant and store at-20°C.

      6.

      Determine the protein concentration in sample using Pierce BCA assay (ThermoFisher).

      Gel electrophoresis and immunoblotting (Tris-glycine buffer system)

      7.

      Incubate appropriate volume of cell lysate solution at 95°C for 0h 5m 0s in SDS sample buffer containing 1% 2-mercaptoethanol (Sigma).

      8.

      Separate the extracted proteins by SDS-PAGE in Mini-PROTEAN TGX precast polyacrylamide gels (Bio-Rad) at 250V and transfer to nitrocellulose membranes (Bio-Rad) at 100 V for 1h 0m 0s or 75 V for 2h 0m 0s (for high molecular weight proteins: >150 kDa).

      9.

      Block the nitrocellulose membranes for 1h 0m 0s with 5% non-fat milk (AmericanBIO) in TBST (tris-buffered saline [TBS] + 0.1% tween 20), then incubate at 4°C with primary antibodies.

      Note
      Antibody dilutions can be found in Table S1.

      10.

      Wash the blots with TBST, thrice, each 0h 5m 0s.

      11.

      Incubate the blots with IRDye 680RD or 800CW (LI-COR) secondary antibodies (1:8000) for 1h 0m 0s at Room temperature in TBST.

      12.

      Image blots using the Gel Doc imaging system (Bio-Rad) using manufacturer’s protocols.

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